ACADEMIC
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Bio-Atlas
Access: Free Access; No login or membership required
Viewer: No plug-ins required; Browser based, optimized for cross-browser and mobile compatibility.
Organization: The Pennsylvania State University - Jake Gittlen Laboratories for Cancer Research
Additional Comments: Designed with integration between model systems and with 3D image formats in mind; complete viewer redesign, and labeling capabilities under development.
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BrainMaps
Access: Free Access; No login or membership required
Viewer: Web-Based; Mac or PC
Organization: Images without diagnoses
Additional Comments: Gross and micro (WSI); human and other mammals.
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The Cancer Imaging Archive
Access: free for almost all images
Viewer: web-based, PC or Mac
Organization: collections of cases by body site; SVS files can be downloaded for research
Additional Comments: The Cancer Imaging Archive (TCIA) is a service which de-identifies and hosts a large archive of medical images of cancer accessible for public download. TCIA organizes and catalogs the images so that they may be used by the research community for a variety of purposes. The data are organized as “collections”; typically patients’ imaging related by a common disease (e.g. lung cancer), image modality or type (MRI, CT, digital histopathology, etc.) or research focus. Supporting data related to the images such as patient outcomes, treatment details, genomics and expert analyses are also provided when available. TCIA is funded by the National Cancer Institute. Most of the data sets in TCIA are accessible to all users but a few collections require a password. There are over 5,000 whole slide images and many more radiology images. The whole slide images can be viewed in a browser or downloaded as SVS files for research purposes. To view pathology images, type in “pathology” into the filter table field on the home page (see red arrow in above image). Click on an image set, and then click on the yellow search button to view images using a browser. SVS files can also be downloaded. A good case set to use to familiarize yourself with the site is the melanoma collection.
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Centrum Archiwizacji Obrazów Morfologicznych (CAOM)
Access: Free Access; No login or membership required
Viewer: Zoomify viewer; Mac and PC compatible; Flash plugin required, does not work with iPads/iPhones
Additional Comments: In Polish and English.
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Emory University
Access: Free Access; No login or membership required
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Hospital Saint-Louis University Media Library
Access: Free Access; No login or membership required
Viewer: Java Plug-in required; Mac or PC
Additional Comments: Variety of WSI with limited diagnoses. Requires JAVA (mSlide Viewer). Mostly in French.
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Institute of Pathology Heidelberg
Access: Free Access; No login or membership required
Viewer: Flash Plug-in required; Mac or PC; PC: Imagescope
Additional Comments: WSI, but in German
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The Iowa Virtual Slidebox
Access: Free Access; No login or membership required
Viewer: Biolucida viewer
Additional Comments: Over 1000 histopathology slides, organized and tagged.
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Juan Rosai's Collection of Surgical Pathology Seminars (presented by USCAP and Aperio)
Access: Free Access; No login or membership required
Viewer: Flash Plug-in required; Mac or PC; PC: Imagescope
Organization: Teaching conference/seminar
Additional Comments: Excellent; some clinical information; 1500 slides.
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NCI Cancer Research Data Commons
URL: https://portal.imaging.datacommons.cancer.gov/
Access: Free
Viewer: Slim web viewer
Organization: Collections of cancer cases organized by body site and disease
Additional Comments: The NCI Imaging Data Commons (IDC) connects researchers with publicly available cancer imaging data in standard DICOM format from a variety of biomedical imaging modalities (including slide microscopy imaging), often linked with other types of cancer data, and co-located with cloud-based computational resources and big data analysis tools provided by the Google Cloud Platform.
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New York University - Virtual Microscope - Pathology
Access: Login Required
Viewer: Google Maps; Mac or PC
Additional Comments: Good, searchable, pathology course teaching slides and cases.
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Pathorama- Universitat of Basel
Access: Free Access; No login or membership required
Additional Comments: Extensive collection of virtual slides and static images. Well organized.
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RecutClub
Access: Free Access; Login required
Viewer: Web-Based; OpenLayers, with static tiled images created from JP2 files; Mac or PC
Organization: Cases arranged by body system, with brief history and diagnosis
Additional Comments: Weekly unknowns from since 2014, with dermatopathology representing more than half of the loaded cases. Predominantly adult cases.
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Tokyo Metropolitan Institute of Medical Science | EBA&N
Access: Free Access but registration required. May take several days to activate.
Viewer: Mac or PC with build in viewer; no plugins required.
Organization: Neuropathology teaching site, with a mixture of instructional video, static images with special stains, and region-of-interest histology.
Additional Comments: Some of the histologic images are whole slide images focusing on a regions of interest, rather than the entire glass slide. Annotations, which can be turned on and off, describe the various morphologic features. Many of the images are static. There is abundant use of special stains. Excellent site for learning neuropathology.
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Uniformed Services University - Department of Pathology
Access: Free Access; No login or membership required
Viewer: Uses Zoomify web viewer.
Additional Comments: Good collection of pathology cases.
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Universitat Basel - vMic - The Virtual Microscope
Access: Free Access; No login or membership required
Additional Comments: Pathology and Oral Histology whole slide images, divided into organ systems. Also excellent set of seminar cases.
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University of British Columbia - Slide Box
Access: Free Access; No login or membership required
Viewer: Flash Plug-in required; Mac or PC
Additional Comments: Pathology course WSI and organ systems.
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University of Leeds
Access: Free Access; No login or membership required
Viewer: Flash Plug-in; Mac or PC
Organization: Case studies
Additional Comments: History and diagnoses WSI; excellent collection.
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University of Western Ontario- Virtual Slide Box
Access: Free Access; No login or membership required
Viewer: Flash Plug-in required; Mac or PC; PC: Imagescope
Additional Comments: Pathology/histology collection
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Vetpathmm
Acces: Free access, workshops and cases from the University of Zurich
Viewer: PC, Mac, tablet and mobile compatible
Additional Comments: Content in English
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INDEPENDENT
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Clearpath
Access: Free Access; Log in Required
Viewer: Apple iPad Only
Additional Comments: Stunning 40x images with touch, zoom and pan capability. Diagnoses provided. Seamless image rendering for smooth and clear navigation. A review of essential dermatopathology terms. Touch enabled highlights of key findings for each term. Board relevant cases offered in a timed exam format. Random test generator makes each exam a new challenge.
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Digital Scope - CAP
Access: Free Access; No login or membership required
Viewer: The image viewer requires Silverlight if accessed via the Browser. Mobile devices do not require a plugin. The best viewing experience is with an iOS device (iPhone or iPad).
Additional Comments: College of American Pathologists image viewer. A handful of sample slides present.
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In Slice - Best Network
Access: Free Access; No login or membership required
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INDUSTRY
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Aperio - WebScope
Access: Free Access; No login or membership required
Viewer: Flash Plug-in required; Mac or PC
Additional Comments: A variety of whole slide images, without diagnoses. Includes Oil immersion and fluorescence
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Digital Scope
Access: Member login required
Viewer: The viewer requires Silverlight if accessed via the Browser. Mobile devices do not require a plugin. The best viewing experience is with an iOS device (iPhone or iPad).
Additional Comments: This is the site for the DigitalScope viewer used by the College of American Pathologists.
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Histowiz
Access: Free Demo, Paid Subscription
Viewer: Mac, PC, and mobile compatible
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Objective Pathology
Access: Free Access; No login or membership required
Viewer: Zoomify viewer; Mac, PC, iOS compatible
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PathPresenter
Access: Free access; registration to access is required
Viewer: Web-based, No plug-in required, PC/Mac; view-only on touchscreen devices
Additional Comments: Presentation platform with thousands of whole slide images (and growing). Upload your own WSI/use cases from the Slide library and present with PowerPoint with annotations and presentation tools.
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TeleSlide
Access: The sections GFHC, SFP and Cancéropôle Grand-Est have free access with cases and workshops
Viewer: PC, Mac, tablet and mobile compatible
Additional Comments: Categories in English, a lot of content in French
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STATIC
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American Society of Hematology Image Bank
Access: Login required, but it's free to create a login
Viewer: Mac or PC
Additional Comments: Still images; not WSI centric
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Brown Medical School - Digital Pathology
Access: Free Access; No login or membership required
Viewer: Mac or PC
Additional Comments: Many still images with diagnoses.
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Enjoy Pathology
Access: Free Access; No login or membership required
Viewer: Web-Based; Mac or PC
Organization: Images with diagnoses
Additional Comments: Hematopathology and surgical pathology images.
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Nikon Microscopy
Access: Free Access; No login or membership required
Viewer: Mac or PC
Additional Comments: Nikon site; excellent still images.
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Pathology Outlines
Access: Free Access; No login or membership required
Additional Comments: Surgical and clinical pathology content divided by chapters
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Revised guides for organ sampling and trimming in mice and rats
Access: Free Access; No login or membership required
Viewer: Mac or PC
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